PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_5B1AB0AD3.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YA
Protein Properties Length: 211aa    MW: 22743 Da    PI: 8.4369
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_5B1AB0AD3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-32107163158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF
  Traes_5DS_5B1AB0AD3.2 107 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 163
                            69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-35105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.934106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.1E-27108163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23140163IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTSVTDGVSG DHRADEQQKQ AAAQGNQEEA PATSIGSQAM VATPSTDYVT PYGHQEACHA  60
MQGQIAYPTV DPFYGSLYAA YGGQPMMHPP MVGMHAAAIP LPTDAIEEPV YVNAKQYNAI  120
LRRRQSRAKA ESERKLIKGR KPYLHESRHQ HALKRARGAG GRFLNAKSDD NEEHSDSSSK  180
DKQNGVAPRS SGQSSQSPKG ATSADKSANH E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-22106179174NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0096240.0BT009624.1 Triticum aestivum clone wre1n.pk0143.h2:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758866.11e-119PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_010237028.11e-119PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_010237027.11e-119PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP14e-44NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLW5G2I81e-156W5G2I8_WHEAT; Uncharacterized protein
STRINGMLOC_52315.11e-142(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-39nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]